Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015912450.1_cds_XP_016462550.1_55767
CDS Infomation

[gene=LOC107785701] [db_xref=GeneID:107785701] [protein=UPF0503 protein At3g09070, chloroplastic-like isoform X2] [protein_id=XP_016462550.1] [location=complement(join(11694,12893..14802))] [gbkey=CDS]
Sequence

ATGAATCCCACCACTACTGCTGATCCAACGCAACCACCGCCACCGCCACTGCCACCGCCG
GCGCAGCCTCCTCGTTCCTCCTTCAGCTGTGACCGACACCCACATGAACAGTTCTCTGGA
TTTTGCCCTGAATGTCTCTGCGAACGCCTCACTACTTTAGATCCTTCTTCTTCTTCCTCT
ACTAATAATAACCCTTCTCCTTCTTCTTCCTCTGTCCTCAAATCCCTTTTCTCCAAAACT
TCTAAACCCACTTCATTTTTCCCCGAACTTCGCCGCACTAAGTCCTTTTCTGCTTCCAAA
AACGAGGCGTTGAGCTTCTTGACTGGTTCTAATTTTGAGCCCCAACGTAAGTCCTGTGAC
GTTCGAGTTCGTAACACTCTCTGCTCCTTATTTTCCCTTGACGAAGACTCAAAAAAGACC
TCCTCCCAAGACCCTCATTCTGAGAATACTGCTCATGCTCTTGTCAATAGACCCGTCCTC
GAGTCTAAAGAAGAAGAGGAAGAGGAACCAGAAAACGATTACGTCAACCACAGAGATAAC
GGAAATGTGGTAAATGAAATAACTGAAGAGTCCCCTGTGAAAAACAGTTTTGCAGAAATT
GTGGAAGAAGAGGTTGTGAATGGAGATATATTATTAAAGCCGATGAAAGATCATATAGAT
CTCGATTCTTCGCAGGCGAAAAAGCAGACTTCAGGAGGAGGAAGGGACTTGAAGGAAATT
GCAGGAAGTTTCTTATCAGCTGCATCAGTTTTCAGCAAGAAATGGCACAACTGGAGGCGA
AAACAGAAGGCGAAAAAACGAAACAATGGTGACAACAACTCATCTACTACACTGTCATTG
GAGAACCCCATTTCGAGGAGGAAATACAACAGGGACACTCAATCGGAAATTGCTGATTAT
TATGGATTCGGAAGAAGGTCATGTGACACTGAACCTCGATTTTCTCTCGATATTGGGAGG
ATTAGTGTTGATGATCCCAGGTACTCTTTTGACGAGCCACGAGCTTCTTGCGATGCCCAT
TTTGTCGCGAGGAGCCTTCCGAGGATCATCCCGCCTATGGTTTCAGTGATAGAAGATGTG
CCAGTGGTTCATGTTCCACGGGCTGATGACCAAATTCCGGTGGAAGAGCCGCGTGTTTCA
GTGAGCTGCATCAATGAGGATGGTGGTGGTGGTGATATGCCTGGAGGGTCTGTTCAGACT
AGGGACTATTACTTGGATTCATCGTCTAGGCGGAGGAAGAGCCTTGATAGATCTAACTCA
ATTAGGAAAACAGCAGCTGCTGTAGTGGCAGAGATTGATGAGATGAAAGCAGTTTCCAAT
GCTAAAGTTCTGCCTGAGAGGGACTCGAATTCAAATTCAAATTCCACTTCTCTAAGGGAT
GATTTAACGGAGACTTTTGAATTGACAGGGTTTAAGGATAATGTTTCTGGGATTGGGATT
GGGGAGCGTAAAGGGTCAAAAAAGTCGAAGAAGTGGGCGTGGAATATATGGGGTTTTATA
CATAGGAAAAGTAATGGGAACAAAGATGAGGAAGAGGACAGGTATAGTAGATCAAATGGG
GTGGAGAGGTCATTTTCAGGATCTTGGCAAGACATAAGGAGGGAGACTAATGGTGATTTA
AGAGGGGGTCTTAATAGGAATATGTTTAGAAGTAATAGCAGTGTTAGTTGGAGGAATTCA
ACTAATATTGGTGGTGGATCTTTTGGTAATGTGAGGAATCTTGGCATTGATACTAATGGT
CATGGTAAAAAGAAAGATGATTTCGTATTGGAGAGGAATCGGAGTGCAAGGTATTCTCCT
AACCATATGGAGAATGGATTCTTGCGGTTCCATTTTGCTCCGATGAGAGGCAGCCGGAGA
AATTTACCTGCGCAAACTAGGCCAAATGGGAGGAGCGTGCTTCGATTGTAG

Peptide Sequence

PEP ID

XP_016462550.1
PEP Infomation

PREDICTED: UPF0503 protein At3g09070, chloroplastic-like isoform X2 [Nicotiana tabacum]
Sequence

MNPTTTADPTQPPPPPLPPPAQPPRSSFSCDRHPHEQFSGFCPECLCERLTTLDPSSSSS
TNNNPSPSSSSVLKSLFSKTSKPTSFFPELRRTKSFSASKNEALSFLTGSNFEPQRKSCD
VRVRNTLCSLFSLDEDSKKTSSQDPHSENTAHALVNRPVLESKEEEEEEPENDYVNHRDN
GNVVNEITEESPVKNSFAEIVEEEVVNGDILLKPMKDHIDLDSSQAKKQTSGGGRDLKEI
AGSFLSAASVFSKKWHNWRRKQKAKKRNNGDNNSSTTLSLENPISRRKYNRDTQSEIADY
YGFGRRSCDTEPRFSLDIGRISVDDPRYSFDEPRASCDAHFVARSLPRIIPPMVSVIEDV
PVVHVPRADDQIPVEEPRVSVSCINEDGGGGDMPGGSVQTRDYYLDSSSRRRKSLDRSNS
IRKTAAAVVAEIDEMKAVSNAKVLPERDSNSNSNSTSLRDDLTETFELTGFKDNVSGIGI
GERKGSKKSKKWAWNIWGFIHRKSNGNKDEEEDRYSRSNGVERSFSGSWQDIRRETNGDL
RGGLNRNMFRSNSSVSWRNSTNIGGGSFGNVRNLGIDTNGHGKKKDDFVLERNRSARYSP
NHMENGFLRFHFAPMRGSRRNLPAQTRPNGRSVLRL

Transcript Sequence

Gene sequence data has not been registered.